3.3¶
Release 3.3 adds:¶
a documentation on readthedocs: https://pygenometracks.readthedocs.io
progress bar for bed, gtf, bedgraph, narrowPeak, epilogos
all colors can be set as
(r, g, b)
with r, g, b values between 0 and 1.all colormap can be set as an array of colors, for example
[red, white, (0, 0, 0.5)]
the titles on the right can be align left, right or center with the argument
--trackLabelHAlign
- for the links track
compact_arcs_level
to be able to see both very long arcs and very small arcs.ylim
to be able to zoom and see small arcs.
a new track type:
file_type = scalebar
which by default is close to the UCSC scale bar.- for the bed tracks
a new gene type:
tssarrow
border_color
andcolor_utr
can be set tobed_rgb
.all_labels_inside
allow to put the name of the region on the left if it ends after the plotted region.labels_in_margin
allow to put the name of the region in the margin if it ends after the plotted region.
line_width
can now be set in the narrowPeak tracks.colormap
can now be set in bedgraphMatrix tracks.
bug fixes:¶
if a bed with no interval is provided, pgt no longer exit.
When an exon had both UTR start and UTR end within it, only the UTR start was considered.
alpha in links tracks was not used
qcat files with missing values are now working.