3.3¶

Release 3.3 adds:¶

a documentation on readthedocs: https://pygenometracks.readthedocs.io
progress bar for bed, gtf, bedgraph, narrowPeak, epilogos
all colors can be set as (r, g, b) with r, g, b values between 0 and 1.
all colormap can be set as an array of colors, for example [red, white, (0, 0, 0.5)]
the titles on the right can be align left, right or center with the argument --trackLabelHAlign
for the links track
- compact_arcs_level to be able to see both very long arcs and very small arcs.
- ylim to be able to zoom and see small arcs.
a new track type: file_type = scalebar which by default is close to the UCSC scale bar.
for the bed tracks
- a new gene type: tssarrow
- border_color and color_utr can be set to bed_rgb.
- all_labels_inside allow to put the name of the region on the left if it ends after the plotted region.
- labels_in_margin allow to put the name of the region in the margin if it ends after the plotted region.
line_width can now be set in the narrowPeak tracks.
colormap can now be set in bedgraphMatrix tracks.

if a bed with no interval is provided, pgt no longer exit.
When an exon had both UTR start and UTR end within it, only the UTR start was considered.
alpha in links tracks was not used
qcat files with missing values are now working.