epilogos¶
Parameters¶
Necessary:¶
file
Optional:¶
title: Put here a title which will apprear on the right.
height: 0.5 (default) or float above 0.
overlay_previous: no (default) or yes or share-y.
categories_file: by default this option is not set
orientation: by default this option is not set but you can also put: inverted.
Output of make_tracks_file:¶
# title of track (plotted on the right side)
title =
# height of track in cm (ignored if the track is overlay on top the previous track)
height = 2
# if you want to plot the track upside-down:
# orientation = inverted
# if you want to plot the track on top of the previous track. Options are 'yes' or 'share-y'.
# For the 'share-y' option the y axis values is shared between this plot and the overlay plot.
# Otherwise, each plot use its own scale
#overlay_previous = yes
# The categories file should contain the color information for each category id
# A categories file should look like:
# {
# "categories":{
# "1":["Active TSS","#ff0000"],
# "2":["Flanking Active TSS","#ff4500"],
# "3":["Transcr at gene 5" and 3"","#32cd32"],
# "4":["Strong transcription","#008000"],
# "5":["Weak transcription","#006400"]
# }
#}
categories_file = <path to json categories file>
# optional. If not given, it is guessed from the file ending.
file_type = epilogos